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SRX22983564: Pv AmpliSeq v2 Peru of P.vivax
1 ILLUMINA (Illumina MiSeq) run: 245,681 spots, 41.7M bases, 23.2Mb downloads

Design: Custom Amplicon Pv AmpliSeq Peru
Submitted by: Institute of Tropical Medicine Antwerp
Study: Plasmodium vivax molecular surveillance in the Peruvian Amazon with Pv Ampliseq assay
PRJNA1055117 • SRP479241 • All experiments • All runs
show Abstracthide Abstract
Here, we apply a modified highly-multiplexed deep sequencing assay: Pv AmpliSeq v2 Peru. The tool targets a newly developed 41-SNP Peru barcode for parasite population analysis within Peru, the 33-SNP vivaxGEN-geo panel for country-level classification, and 11 putative drug resistance genes. It was applied to 230 samples from the Peruvian Amazon (2007-2020), generating baseline surveillance data.
Sample:
SAMN38982351 • SRS19949171 • All experiments • All runs
Organism: Plasmodium vivax
Library:
Name: 83_S86
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 245,681 spots, 41.7M bases, 23.2Mb
Run# of Spots# of BasesSizePublished
SRR27305844245,68141.7M23.2Mb2023-12-20

ID:
31053237

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